Standardizes antibiotic names using fuzzy matching against WHO AWaRe reference.
Usage
prep_standardize_antibiotics(
data,
antibiotic_col = "antibiotic_name",
who_table = NULL,
add_class = TRUE,
add_aware = TRUE
)Arguments
- data
Data frame with antibiotic data.
- antibiotic_col
Character. Column name with antibiotic names. Default "antibiotic_name".
- who_table
Data frame. WHO AWaRe classification table. If NULL, loads from inst/extdata/WHO_aware_class.csv.
- add_class
Logical. Add antibiotic_class column. Default TRUE.
- add_aware
Logical. Add aware_category column. Default TRUE.