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Reconcile Observed and Inferred HAI/CAI Classification

Source: R/prep_hai_cai.R
prep_reconcile_hai_observed_inferred.Rd

Where both an observed (raw) infection type and an inferred (date-derived) type exist, flags rows where they disagree. Retains observed classification by default and marks discordant records.

Usage

prep_reconcile_hai_observed_inferred(
  data,
  observed_col = "infection_type_observed",
  inferred_col = "infection_type_inferred",
  output_col = "infection_type"
)

Arguments

data

Data frame.

observed_col

Character. Observed infection type column. Default "infection_type_observed".

inferred_col

Character. Inferred infection type column. Default "infection_type_inferred".

output_col

Character. Reconciled output column. Default "infection_type".

Value

Data frame with reconciled infection_type and hai_discordant logical flag.