Checks whether an organism name matches any known contaminant for a specific
syndrome or specimen type using flexible pattern matching.
Usage
prep_is_contaminant(organism_name, syndrome = NULL, specimen_type = NULL)
Arguments
- organism_name
Character vector of organism name(s) to check.
- syndrome
Character. Optional syndrome filter.
- specimen_type
Character. Optional specimen type filter.
Value
Logical vector (same length as organism_name).