Infers Community-Acquired (CAI) vs Hospital-Acquired (HAI) infection using the admission-to-culture date gap (default cutoff: 2 days / 48 hours).
Usage
prep_derive_hai_cai(
data,
infection_type_col = "infection_type",
admission_col = "date_of_admission",
culture_col = "date_of_culture",
hai_cutoff = 2,
overwrite = FALSE
)Arguments
- data
Data frame.
- infection_type_col
Character. Infection type column. Default "infection_type".
- admission_col
Character. Admission date column. Default "date_of_admission".
- culture_col
Character. Culture date column. Default "date_of_culture".
- hai_cutoff
Numeric. Days after admission to classify as HAI. Default 2.
- overwrite
Logical. Recalculate even when already present. Default FALSE.