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Deduplicate Events

Source: R/prep_events.R
prep_deduplicate_events.Rd

Removes duplicate rows within groups. Two modes:

Usage

prep_deduplicate_events(
  data,
  event_col = "event_id",
  organism_col = "organism_normalized",
  antibiotic_col = "antibiotic_normalized",
  key_cols = NULL,
  keep = "first"
)

Arguments

data

Data frame.

event_col

Character. Event ID column (event-aware mode). Default "event_id".

organism_col

Character. Organism column (event-aware mode). Default "organism_normalized".

antibiotic_col

Character. Antibiotic column (event-aware mode). Default "antibiotic_normalized".

key_cols

Character vector. When supplied, switches to generic mode and uses these columns for duplicate detection. NULL uses event-aware mode. Default NULL.

keep

Character. "first", "last", or "none" (drop all duplicates). Default "first".

Value

Deduplicated data frame.

Details

Event-aware (default)

Groups by event_col + organism_col + antibiotic_col and keeps first/last antibiotic test per group. Requires event_col to be present.

Generic (key_cols supplied)

Groups by key_cols and drops duplicates. When keep = "none", both copies of every duplicate are removed. Replaces the former remove_duplicate_rows() helper.