Plot Syndrome Distribution

Produces a column chart showing the number of unique patients per infectious syndrome. Supports three modes: pooled across all centres ("overall"), faceted by centre ("faceted"), or a single specified centre ("single").

Usage

plot_syndrome_distribution(
  data,
  mode = c("overall", "faceted", "single"),
  center = NULL,
  patient_col = "PatientInformation_id",
  syndrome_col = "infectious_syndrome",
  center_col = "center_name",
  colour = "#4393C3",
  ncol = 2,
  base_size = 14,
  title = NULL
)

Arguments

data

Data frame. Must contain the columns named by patient_col and syndrome_col. In "faceted" and "single" modes, center_col is also required.

mode

Character. One of "overall" (default), "faceted", or "single".

center

Character or NULL. Centre name to display when mode = "single". Ignored otherwise.

patient_col

Character. Column containing patient identifiers. Default "PatientInformation_id".

syndrome_col

Character. Column containing infectious syndrome labels. Default "infectious_syndrome".

center_col

Character. Column containing hospital / centre names. Default "center_name".

colour

Character. Fill colour for the bars. Default "#4393C3".

ncol

Integer. Number of columns in faceted layout. Default 2.

base_size

Numeric. Base font size. Default 14.

title

Character. Custom plot title. Auto-generated if NULL.

Value

A ggplot object.