Generate diagnostic plots for a fitted Bayesian multivariate probit model — plot_probit_diagnostics • anumaan

Generate diagnostic plots for a fitted Bayesian multivariate probit model

Usage

plot_probit_diagnostics(
  fit_obj,
  output_dir,
  experiment_id,
  pathogen,
  max_params = 20L
)

Arguments

fit_obj: Named list returned by fit_bayesian_multivariate_probit().
output_dir: Directory where the PDF will be saved.
experiment_id: Character. Experiment identifier (used in filename and titles).
pathogen: Character. Pathogen name (used in plot titles).
max_params: Integer. Maximum number of parameters shown in trace/rank plots. Defaults to 20. Only beta, tau_*, and lp__ are ever included.

Value

Invisibly returns the path to the saved PDF, or NULL if skipped.