Normalizes specimen/sample type names and adds sample_category and
sterile_classification from the reference CSV file.
Usage
normalize_specimen(data, specimen_col = "specimen_type", add_categories = TRUE)
Arguments
- data
Data frame with specimen column
- specimen_col
Character. Specimen column name. Default "specimen_type".
- add_categories
Logical. Add sample_category and sterile_classification.
Default TRUE.
Value
Data frame with specimen_normalized, sample_category, and
sterile_classification columns
Examples
if (FALSE) { # \dontrun{
data <- data.frame(specimen = c("Blood", "Urine", "CSF"))
result <- normalize_specimen(data, specimen_col = "specimen")
} # }