Classify Infection-Related Mortality — classify_mortality • anumaan

Determines if death was related to infection using date window logic. Implements proxy logic when dates are missing.

Usage

classify_mortality(
  data,
  outcome_col = "final_outcome",
  event_date_col = "date_of_culture",
  outcome_date_col = "date_of_final_outcome",
  window = 14
)

Arguments

data: Data frame
outcome_col: Character. Outcome column. Default "final_outcome".
event_date_col: Character. Event/culture date. Default "date_of_culture".
outcome_date_col: Character. Outcome date. Default "date_of_final_outcome".
window: Numeric. Days after event to classify death as infection-related. Default 14.

Value

Data frame with mortality_infection, mortality_method, mortality_confidence columns