Classifies isolates as MDR using Magiorakos 2012 criteria.
Usage
classify_mdr(data, definition = "Magiorakos", organism_group_col = "org_group")
Arguments
- data
Data frame
- definition
Character. "Magiorakos" or "WHO". Default "Magiorakos".
- organism_group_col
Character. Organism group column for
pathogen-specific thresholds.
Value
Data frame with mdr, mdr_confidence, mdr_method,
n_resistant_categories columns
References
Magiorakos AP et al. Clin Microbiol Infect. 2012;18(3):268-281.