Add RR Pathogen and Drug Mappings — add_rr_mappings • anumaan

Adds rr_pathogen and rr_drug columns to data by matching against the GBD RR reference list.

Usage

add_rr_mappings(
  data,
  organism_col = "organism_normalized",
  antibiotic_col = "antibiotic_class"
)

Arguments

data: Data frame with organism and antibiotic columns
organism_col: Character. Organism column. Default "organism_normalized".
antibiotic_col: Character. Antibiotic column. Default "antibiotic_class".

Value

Data frame with rr_pathogen and rr_drug columns added

Examples

if (FALSE) { # \dontrun{
data <- add_rr_mappings(data)
} # }